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Guides and notes Port Jefferson Station

Port Jefferson Station Open Permits: How Brookhaven's New Portal Handles Old Permits, Existing Use and Corrections Before a Sale

October 29, 2026 · Mia Kaiser, Licensed Real Estate Salesperson

A Port Jefferson Station house sits in the Town of Brookhaven, so its permits and certificates live with the Town's Building Division, which moved to an online portal this fall. Here is how that file works before a sale of one of the Port Jefferson Station homes on the market.

TL;DR

  • Brookhaven's Building Division has moved to Town of Brookhaven Digital Services, and drop-offs are no longer accepted.
  • An application filed before 9/28/2026 that cannot be found online goes through a Town help form.
  • A building permit is generally valid for 365 days, and final approval comes before a Certificate of Occupancy or Compliance is issued.
  • Four Town filings deal with an older file: a Certificate of Existing Use, a Letter of Correction, a Void Building Permit request and a Chain of Title.
  • Question 9 of the State's disclosure form asks the seller whether there are certificates of occupancy for the property.

Table of contents

  • Where the Brookhaven permit file lives now
  • How a permit stays open
  • Four filings for an older file
  • What the seller's disclosure asks
  • Related pages

Where the Brookhaven permit file lives now

The Town's Building Division page says the division has transitioned to Town of Brookhaven Digital Services, a portal that replaces separate legacy systems and paper processes for permits, applications, plan reviews, inspections and payments. Drop-offs are no longer accepted. Owners may still file their own residential applications on paper at Town Hall, if every document fits on 8½-by-11-inch paper.

For an application submitted before 9/28/2026 that an owner cannot find or update online, the page points to an online help form, and Town staff follow up. The counter hours change too: 9:00am to 4:15pm until October 30, then 9:00 to 3:30 pm starting November 2.

How a permit stays open

According to the Town's building construction page, an application stays active for 24 months from submission, and an issued permit is generally valid for 365 days, with extensions available for eligible projects. The page lists the steps through scheduling inspections and receiving final approval, and notes that final approval is required before a Certificate of Occupancy or Compliance is issued. A new application asks for every Certificate of Occupancy, Compliance, Existing Use and Zoning Compliance on the property, plus a survey dated within one year.

So a permit that was issued but never reached final approval has no certificate closing it out.

Four filings for an older file

Each of these is filed through Digital Services.

  • Certificate of Existing Use. The Town's CEU page says it covers mainland primary structures built before 1959. It asks for a survey dated within a year and photos of all sides of all structures, and the residential fee is $165. A structure built after the cutoff may need a different permit process.
  • Letter of Correction. Per the Letter of Correction page, this corrects information on an existing Certificate of Occupancy, Compliance, Existing Use or Zoning Compliance. It needs a survey, a copy of the certificate and a minimum of four photos, and the fee is $125.
  • Void Building Permit request. The void request page describes a request that an issued permit be voided, with a copy of the permit, photos of the structure and an explanation. If approved, the permit is voided on the Town file.
  • Chain of Title. The Chain of Title page describes an application that establishes a property's ownership history. It requires a Chain of Title Report and a survey, and the fee is $55. An Authorized Agent Letter may be required when an abstract company, not a title insurer, prepared the report.

What the seller's disclosure asks

The State's Property Condition Disclosure Statement asks in question 9 whether there are certificates of occupancy related to the property, and asks for an explanation if there are none. The seller delivers the statement before the buyer signs a binding contract, and a seller who learns something that makes an answer inaccurate delivers a revised statement as soon as practicable, up to the transfer of title.

Related pages

More about me.

Questions about Port Jefferson Station

How do I search open permits in the Town of Brookhaven?

The Town's Building Division has moved to Town of Brookhaven Digital Services, which handles permits, applications, inspections and certificates online. For an application filed before 9/28/2026 that cannot be found online, the Town offers an online help form.

Can you sell a house with an open permit in Brookhaven?

The Town's pages do not bar a sale. What they show is that final approval is required before a Certificate of Occupancy or Compliance is issued, and a new application asks for every certificate on the property, so an unclosed permit stays on the file until it is finaled or voided.

How do you close an open permit on a house in Brookhaven?

A permit is closed by completing the required inspections and receiving final approval. If the work never happened, the Town has a Void Building Permit request, filed with a copy of the permit, photos of the structure and an explanation.

What is a certificate of existing use in Brookhaven?

The Town says a Certificate of Existing Use may be issued for older structures documented as existing before Town permit requirements: mainland primary structures built before 1959. It needs a survey dated within a year and photos of all structures, and the residential fee is $165.

How long is a Brookhaven building permit good for?

The Town says an issued Building Construction Permit is generally valid for 365 days from issuance, an application stays active for 24 months from submission, and extensions may be available for eligible projects.

What happens to a Brookhaven building application filed before September 28, 2026?

The Building Division page says an owner who cannot find or update an application submitted before 9/28/2026 can fill out an online help form, and a member of the Town's team will review the request and follow up.

What if the Certificate of Occupancy has wrong information on it?

Brookhaven's Letter of Correction corrects information on an existing Certificate of Occupancy, Compliance, Existing Use or Zoning Compliance. It needs a survey, a copy of the certificate and a minimum of four photos, and the fee is $125.

Can I still drop off a building permit application at Brookhaven Town Hall?

The Town says drop-offs are no longer accepted. Owners may still file their own residential applications on paper at Town Hall on request if every document fits on 8½-by-11-inch paper.

Sources

  1. https://www.brookhavenny.gov/284/Building-Division
  2. https://www.brookhavenny.gov/1468/Building-Construction
  3. https://www.brookhavenny.gov/1471/Certificate-of-Existing-Use-CEU
  4. https://www.brookhavenny.gov/1473/Letter-of-Correction
  5. https://www.brookhavenny.gov/1474/Void-Building-PermitLicense-Request
  6. https://www.brookhavenny.gov/1472/Chain-of-Title
  7. https://dos.ny.gov/system/files/documents/2025/05/dos-1614-f-property-condition-disclosure-statement_04.2025-eff.-07.2025.pdf

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